Running on HPC

ABI HPC Standard

If running on the ABI HPC, you can use a pre-installed (with all neccesary libraries) OpenCOR pythonshell. To do this, you need to clone the circulatory_autogen repo into a directory of your choice, then change the opencor_pythonshell_path in opencor_pythonshell_path.sh to...

opencor_pythonshell_path=/hpc/farg967/OpenCOR-0-8-1-Linux/pythonshell

Following that to run in parallel you need to load mpich. Do the following from the {project_dir}/user_run_files dir:

. load_mpi.sh

Then you should be able to run as normal from the user_run_files dir

ABI HPC Extra

If you need to install specific python libraries that aren't installed in the above OpenCOR python version, then you will need to install a separate OpenCOR and install the libraries. See getting-started for how to install python libraries, the process should be the same on the HPC.

Warning

Before installing mpi4py in your separate OpenCOR, make sure you load mpi with

module load mpi/mpich-x86_64 && echo "succesfully loaded mpi/mpich-x86_64"